PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001331
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 411aa    MW: 44823.5 Da    PI: 5.163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001331genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00013063381754
                HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++   L++l+ +      +K + a++L +A+eYIk L
  Cla001331 306 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 338
                55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-11299353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-8299350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-5299343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAEDFQAPIC GDNWWSSSRS MLVTVGGLSP CSVGIADLSW PSADDFLDSK PKFAATDSDN  60
NSSMLFQDYS TFQMMGFALS SSTTSDHWNQ SEDLLNSNGI PTNFSSENGL KQGNDREGYL  120
NCSSTNTTNC QAGLFPVEST LYGYNSSPST KLLQTNLYDG DPDPHPLFNS TPSITTNSTT  180
FPTNNPNHLS LSSTPNFPSN YLLKPSLSNP PPHLHFTNNT PFWNASSSNT IPQGIASLLE  240
DNNPKSQNNT LAFKSMNSGN CEDGQDQVKK GDKNSAITTE PAVFKRPRIE TPSPLPTFKV  300
RKEKLGDRVT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVSVLSTPYM KSNNGITPVQ  360
HQQASEKANP DSPKQDLKSR GLCLVPISST FPVTNATTAD FWTPTFGGTF R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-139LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-139LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658177.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A0A0KHH20.0A0A0A0KHH2_CUCSA; Uncharacterized protein
STRINGXP_008439935.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-65bHLH family protein