PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla001373

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 261aa MW: 29320.6 Da PI: 8.8435

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla001373	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.3	5e-36	52	107	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Cla001373 52 EQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 107 689***********************************************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.9E-32	53	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.484	54	108	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-22	54	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGLSSKQVSI DGFDWSKALM QAQKLELPKL APSSGVKRSQ HQNQNQIQPQ IEQLKCPRCD 60 STNTKFCYYN NYNKSQPRHF CRACKRHWTK GGTLRNVPVG GGRKNKRLKK KPTPKSTKSS 120 SSAAADVINP QMDVHHFQNL PLYQGLIFSP PSSSNWAECE NFTTNYGILN SQPPDFSAVS 180 TTTSTHSPMS PKFNNYSDQE LKPTETEQPA NSTSTHHPWQ LPSTACGVAD MSNSYWSWDD 240 INTFAATDLN IPWDDDHDIK P

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439887.1	1e-163	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3AZE8	1e-162	A0A1S3AZE8_CUCME; dof zinc finger protein DOF1.4-like
STRING	XP_008439887.1	1e-162	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-29	Dof family protein