PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001468
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 397aa    MW: 44802.4 Da    PI: 4.9952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001468genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000821636323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ C+ksFs+   L  H+r+H
  Cla001468 16 CKLCNKSFSNGKVLGGHMRSH 36
               *******************99 PP
2zf-C2H214.69.7e-0584104323
                ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                C++Cgk F ++  L  H+r H
  Cla001468  84 CKICGKGFESSKALFGHMRHH 104
                *******************99 PP
3zf-C2H215.64.5e-05114135223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C  C+k F +  +L++H+++H
  Cla001468 114 RCRECNKEFENLKSLTSHMKSH 135
                6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-5838IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.62E-61040No hitNo description
PfamPF139121.3E-81438IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5331441IPR007087Zinc finger, C2H2
SMARTSM003550.111436IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003550.02782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.25882109IPR007087Zinc finger, C2H2
PfamPF139122.6E-683106IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-883135No hitNo description
Gene3DG3DSA:3.30.160.602.1E-483108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PfamPF139122.8E-6113137IPR007087Zinc finger, C2H2
SMARTSM003550.0044113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PfamPF139121.7E-11317339IPR007087Zinc finger, C2H2
SMARTSM003550.99317339IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037317339IPR007087Zinc finger, C2H2
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MELQPQDHQE QKQHLCKLCN KSFSNGKVLG GHMRSHRSNQ NPPKKRKKNS IPGSYSLREN  60
PKKSWKFSAP NGENSETPLQ ENHCKICGKG FESSKALFGH MRHHSGKRKE PIRRCRECNK  120
EFENLKSLTS HMKSHCQSSV TGGGQSDGET LGLLRRKRSR RTRCKLGGSN YPYCCSSSNS  180
DLIEYSSSSV VDGIESDVEE LALCLLMLSK GVGNFGAEFS SEFIGGNHFS GFEAKSPLNR  240
TANFEVDFED RVKMEFQEVG RYDTEVELGM PKLDDDDESE MGFCEILREN GLKSSKEGEI  300
EDFCVKACDL GMEEGNHQCD VCLKVFGSGQ ALGGHKRAHL LKPNLMEFEE DENENKNEDE  360
DEDEEEEDDD DDEFKPWWNG VDENEQQQQG VGLLSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455588.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3C1Z30.0A0A1S3C1Z3_CUCME; zinc finger protein ZAT1-like
STRINGXP_008455588.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-12C2H2-like zinc finger protein