PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001519
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 328aa    MW: 36333 Da    PI: 8.9376
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001519genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.1e-3950126278
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Cla001519  50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 126
                **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-3244111IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.71847124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3748129IPR004333Transcription factor, SBP-box
PfamPF031106.7E-2950123IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MYWKLRGIGN MDERSTDDMK GTRVALMESS SSRLMKRSRA PGSVAQVPSC MVDGCSSDLS  60
KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR  120
RRKPQPATMT LNAGRFLYGN QGPRFLPFGN QLLSASNDVS SSWIGMIKPE NNTPLCSGNS  180
QFDFTDRRKS MLPGSLAFDY KEKQLAISCI PIGLFPKSSD TQPFLNVGSS NVGNVQKVLG  240
NGSNRFFNSD CALSLLSTPV EPGEINLSSM SQSNLIPPAN FIHSDGLGLE SDPINSGLVS  300
DGSSDANIRC YSTFQDGPDG SSVDLFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-27501231184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105122RKRSCRKRLDGHNRRRRK
2105123RKRSCRKRLDGHNRRRRKP
3106123KRSCRKRLDGHNRRRRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140535.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A0A0KAG40.0A0A0A0KAG4_CUCSA; Uncharacterized protein
STRINGXP_004170782.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-46SBP family protein