PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001654
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 253aa    MW: 28249.2 Da    PI: 7.6658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001654genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.45.9e-1479131155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++ +hn+ Er RR++iNs ++ Lr llP+ +   + kKls  ++  +   YI +Lq
  Cla001654  79 KKLSHNASERDRRRKINSLYSSLRALLPStD---QMKKLSNPATISRILSYIPELQ 131
                6789*************************77...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.36778130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1578147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1179131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.73E-1379135No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1379145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-1084136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLALSSPLFS PHQWPLEDPI SLHHQNNSLF SPFEASDHSF YLQFPSSPPL QPPNTELDHY  60
PSSATPSPKG GSNISKMAKK LSHNASERDR RRKINSLYSS LRALLPSTDQ MKKLSNPATI  120
SRILSYIPEL QQQVEGLIGK KEELMAAMVG REVKNDEEKK TKCAASSSSS IISASRLSRW  180
EMAIQISTDI NGGYRNSLSE ILVCLEEEGL LLLNASSFES FDGKVFHNLH LQMGSNCRME  240
PKMLSTKLLE MFP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818781e-124LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132621e-124LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144337.21e-139PREDICTED: transcription factor bHLH100-like
TrEMBLA0A1S3C2721e-131A0A1S3C272_CUCME; transcription factor bHLH100-like
STRINGXP_004170119.11e-139(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-29bHLH family protein