PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001702
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 260aa    MW: 29165.4 Da    PI: 8.5949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001702genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++v ++G g+W+t + + g+ R +k+c++rw +yl
        Cla001702 16 KGLWSPEEDQRLRNYVLKYGHGCWSTLPLKAGLERNGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding49.78.8e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+  ++ ++++lG++ W+ Ia++++ gRt++++k+ w++yl
        Cla001702  69 RGTFSQEEQHTILSLHHMLGNK-WSQIAQHLP-GRTDNEVKNLWHSYL 114
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-221066IPR009057Homeodomain-like
PROSITE profilePS5129417.9541163IPR017930Myb domain
SuperFamilySSF466895.87E-2913110IPR009057Homeodomain-like
SMARTSM007173.5E-111565IPR001005SANT/Myb domain
PfamPF002493.3E-131663IPR001005SANT/Myb domain
CDDcd001671.20E-91963No hitNo description
PROSITE profilePS5129424.82464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2567118IPR009057Homeodomain-like
SMARTSM007174.0E-1268116IPR001005SANT/Myb domain
PfamPF002493.8E-1569114IPR001005SANT/Myb domain
CDDcd001675.10E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGCETASHRT KPKHRKGLWS PEEDQRLRNY VLKYGHGCWS TLPLKAGLER NGKSCRLRWI  60
NYLRPGLKRG TFSQEEQHTI LSLHHMLGNK WSQIAQHLPG RTDNEVKNLW HSYLKKKLGK  120
QQQKQPSSTY STTNSTTSDS ADSSTTNQSM DSPKPNNSLP KLFFAEWLAP NHHTADGWSS  180
GGPEFGSSLS LHQSVVGNNN CSGVDFEFGT SLGSEHQNNG IMDCQVKFEN HNSIDFANYT  240
SAGDVCVEQL LHFGNGFMNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121183108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818245e-32LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132585e-32LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148377.11e-107PREDICTED: transcription factor LAF1
SwissprotQ9M0K43e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0A0LEM11e-106A0A0A0LEM1_CUCSA; Uncharacterized protein
STRINGXP_004165764.11e-107(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-56myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]