PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001809
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 287aa    MW: 32788.2 Da    PI: 8.9788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001809genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.3e-141801799
               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99
               ++pk+f++++g+    s  ++l+ ++g++W+v l ++ + g+++l+kGW +F +   L+ g  +vF+l  gr s+f   v++f+ 
  Cla001809  1 MIPKTFVKDYGKL--LSSSVSLKLSDGKEWKVGL-MTAGNGAVWLEKGWDKFSEYYCLEFGSLLVFRLLdGRsSSF--DVTIFDP 80
               69********855..77789999999********.6777788*************************652665666..9999985 PP
2B337.35e-122242744294
                TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
         B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +++W+v+l  ++++g + +++GW+ F ++ngL++gD+++F+++++ ++  ++v
  Cla001809 224 GNKQWNVTL--KQYDGYVRFSAGWSTFRDDNGLEDGDTCLFEMVSKiNCV-FKV 274
                459******..*******************************87653333.344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-16181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.48181IPR003340B3 DNA binding domain
PfamPF023625.9E-10179IPR003340B3 DNA binding domain
SMARTSM010190.014181IPR003340B3 DNA binding domain
CDDcd100173.44E-10179No hitNo description
Gene3DG3DSA:2.40.330.105.5E-16282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-12193278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15194277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-10198278No hitNo description
SMARTSM010190.014199280IPR003340B3 DNA binding domain
PfamPF023622.9E-8224273IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87225280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MIPKTFVKDY GKLLSSSVSL KLSDGKEWKV GLMTAGNGAV WLEKGWDKFS EYYCLEFGSL  60
LVFRLLDGRS SSFDVTIFDP TGVETQYSCN LDFSTAELEE DSDSDSDKIL ESFDVHLKKR  120
KKASVPCRQS RKKMRKEDSF TIKTEPEEEE GCNNIFRNIP SCKERMSKDV VKFSRKKQQL  180
ANKVEATQRF SSKSDQKPYF KVVMRQSNVR GRFNLVYSAT LQVGNKQWNV TLKQYDGYVR  240
FSAGWSTFRD DNGLEDGDTC LFEMVSKINC VFKVSISKKV TSSASID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657839.17e-95PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0A0KJE04e-91A0A0A0KJE0_CUCSA; Uncharacterized protein
STRINGXP_004160515.11e-117(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein