PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001964
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 639aa    MW: 71534.7 Da    PI: 6.4181
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001964genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.42.2e-2966150187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laL+++r+em+ ++r+++ k+plWe++s+k+ e g++rs+k+Ckek+en+ k++k++ke +++  +++s+t+++f+qlea
  Cla001964  66 RWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSG--KPDSKTYKFFEQLEA 150
                8********************************************************************9..58999********85 PP
2trihelix101.76e-32461546187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev+aLi++r+++e++++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a
  Cla001964 461 RWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKAR-PEDSKTCPYFHQLDA 546
                8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-563125IPR001005SANT/Myb domain
PROSITE profilePS500907.1265123IPR017877Myb-like domain
CDDcd122031.53E-2365130No hitNo description
PfamPF138375.1E-1965151No hitNo description
PRINTSPR012171.3E-10167183No hitNo description
PRINTSPR012171.3E-10203215No hitNo description
PRINTSPR012171.3E-10215236No hitNo description
PRINTSPR012171.3E-10374399No hitNo description
PROSITE profilePS500907.573454518IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-5454517IPR009057Homeodomain-like
SMARTSM007170.0015458520IPR001005SANT/Myb domain
PfamPF138375.5E-22460547No hitNo description
CDDcd122038.68E-27461525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MLGDSTTSVL GGGAGGGEAA VPETTHHHDG LMGDMEENNN NSGEDERGRS GGGGGDDGDR  60
SFGGNRWPRQ ETLALLKIRS EMDVAFRDAS VKGPLWEQIS RKLGELGYHR SAKKCKEKFE  120
NVYKYHKRTK EVRSGKPDSK TYKFFEQLEA LENHPPLNFH SHLSKPTPPP QPPPPTAVIS  180
PIPSSTVPST TLPHLMNISF SQPNPTIHLP SPPPPPAPLP LNNPTSLPTT VPPSMPFQIN  240
VPSAGVGFQS IEADLISNST SDDINSSTSS DEASRKRRRK RKWKDFFERL MKEVIQKQEE  300
MQKRFLEAIE KREQERVVRE EAWRMQEMAK INREREILAQ ERSMAAAKDA AITSFLQKIT  360
ESQHNNTNNN ASQPSPPPPP PPPSQQQQQP IPTSNPTPVV QPSPRPPPPA APQASTLQVV  420
VPNSTPQKVG NNNELLQMEI MKMDHNGGEN YSISPASSSS RWPKVEVQAL IKLRTNLETK  480
YQENGPKGPL WEEISSAMKK LGYNRNAKRC KEKWENINKY FKKVKESRKA RPEDSKTCPY  540
FHQLDALYRE KSNNTNNNII GSSTQIMQHQ QQPLMVRPEQ QWPPQQEITR PDSGNEEMES  600
EPMDRDDKDD DEEDEEEEDE GGGNYEIVAS KPASVSAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274278RKRRR
2275281KRRRKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140891.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A0A0KCE10.0A0A0A0KCE1_CUCSA; Uncharacterized protein
STRINGXP_004140891.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-55Trihelix family protein