PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002208
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 410aa    MW: 47635.6 Da    PI: 4.5258
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002208genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67.1e-32161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkkly+i++d++++++isw+++ +sf +ld ++f+  +LpkyFkhsnf+SF+RQLn+YgF+k++++          weF+ + F kg+k+ll++i 
     Cla002208  16 FLKKLYDIVDDDSTNSIISWTSSHDSFTILDITQFSLLLLPKYFKHSNFSSFMRQLNIYGFRKIDTDC---------WEFATDGFIKGQKHLLKNIY 103
                   9***************************************************************9987.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Cla002208 104 RRKN 107
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-336100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.07E-3211105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-5012105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2716105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVKSAAERQG SSVPPFLKKL YDIVDDDSTN SIISWTSSHD SFTILDITQF SLLLLPKYFK  60
HSNFSSFMRQ LNIYGFRKID TDCWEFATDG FIKGQKHLLK NIYRRKNIQG TDQHKASQPQ  120
DNSEGQVELH DYSGLWKEVE NLKIDKNAVM QELVKLKQHQ ETSENKLLLL RDRLQGMEKN  180
QQQMLSFLVM AVQSPGFLVQ FLQPKEKNWR MADSGNMLEQ IPDDNQVPSN GMIVRYQRPL  240
DELSTTLLPA VTSPGKQQES DPFPDGMKDF FLNSDFMKVL MDEKLCLDNH SQFVLPDVQD  300
VAWEQLLLAS PFSGNSDYGR KIDHEREPMD NEDDELDMET IDTRTHEEKS QDFELLIRQM  360
EKCEDFEIQP RLDESYIEKS NTVNLLTQQM EFLASDHEIL YETPRQDAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231110524129Heat shock factor protein 1
5d5v_B2e-231110524129Heat shock factor protein 1
5d5v_D2e-231110524129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819070.0LN681907.1 Cucumis melo genomic scaffold, anchoredscaffold00093.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464693.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A1S3CMJ80.0A0A1S3CMJ8_CUCME; heat stress transcription factor A-8
STRINGXP_008464693.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-103heat shock transcription factor A8