PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002323

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 241aa MW: 28002.1 Da PI: 10.0495

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002323	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.9	1.7e-42	89	222	2	127
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksa 94 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl +++ aik+l +t +s++s + ++s+++s+ n++ ++++++ Cla002323 89 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASQTIEWLLLNSNSAIKDLKQTYFSNNSGVshgsvysGQSSEVVSEINNQDQEQEEAG 188 68************************************************************555554442233445455555555556666666666 PP TCP 95 a.kskksqksaasalnlakesrakarararertr 127 ++++++k+ + + + +e r +ararar+rt Cla002323 189 GfTGSFKDKKGRQLRTVGREARDRARARARQRTL 222 6799****9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-39	90	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.092	91	149	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MYQQEQYEDQ LINSYDDLHF PHPFLDDDDL FLSHFLSQQQ QQQQLFEQEE KQDHEVDETT 60 RKMKTKTKKK KVSGGNSSRK NGRSCTKRRG KKDRHSKIYT AQGPRDRRMR LSLQIARKFF 120 DLQDMLGFDK ASQTIEWLLL NSNSAIKDLK QTYFSNNSGV SHGSVYSGQS SEVVSEINNQ 180 DQEQEEAGGF TGSFKDKKGR QLRTVGREAR DRARARARQR TLLKNTSFLQ PPINLDHHLS 240 G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	219	RDRARARARQR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	1e-97	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	1e-97	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656248.1	2e-83	PREDICTED: transcription factor TCP12
TrEMBL	A0A0A0KRR2	5e-82	A0A0A0KRR2_CUCSA; Uncharacterized protein
STRING	XP_008437699.1	6e-68	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-29	TCP domain protein 12