PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002419
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29522.8 Da    PI: 8.1783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002419genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-193891456
               -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++f++eq+++Le+ F++ +++++ +++ eLA++lgL+ rq+ +WFqNrRa+++
  Cla002419 38 KRRFSDEQIRTLETIFYStDSKLDSRKKVELATELGLQPRQIAIWFQNRRARWR 91
               578**************98**********************************9 PP
2HD-ZIP_I/II114.47.1e-3737129293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr+s+eq+++LE+ F +++ kL++++Kvela+eLglqprq+a+WFqnrRAR+++k++E+++++L+++yd+l+++ ++L++e+++L ++l+e
    Cla002419  37 NKRRFSDEQIRTLETIFYSTDsKLDSRKKVELATELGLQPRQIAIWFQNRRARWRSKEMENNFTSLRANYDNLASQFKSLQEENNSLLSQLQE 129
                  69***************87777********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-173094IPR009057Homeodomain-like
PROSITE profilePS5007117.3463293IPR001356Homeobox domain
SMARTSM003892.0E-173597IPR001356Homeobox domain
PfamPF000465.7E-173891IPR001356Homeobox domain
CDDcd000861.78E-144194No hitNo description
Gene3DG3DSA:1.10.10.601.6E-184393IPR009057Homeodomain-like
PRINTSPR000313.2E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000313.2E-67389IPR000047Helix-turn-helix motif
PfamPF021831.9E-1093135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDRNEYLTIP NFETIALDSL QTCSTRRRKK KNNNNMNKRR FSDEQIRTLE TIFYSTDSKL  60
DSRKKVELAT ELGLQPRQIA IWFQNRRARW RSKEMENNFT SLRANYDNLA SQFKSLQEEN  120
NSLLSQLQEL SVLLQGPRGG YYWNDIRKST CETQEKPKSF HDELKQSGVT YLNNNRNINK  180
KCIVNGEGDR GLQMTRLSEG RSNDISNVEE QAYQLLDPNG SSESIEKWCG FDSDGGFVFE  240
YQSCSSLQGL SFWG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023553122.11e-133homeobox-leucine zipper protein ATHB-12-like
RefseqXP_023553124.11e-133homeobox-leucine zipper protein ATHB-12-like
STRINGXP_004137302.11e-82(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-29homeobox 7