PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002516
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 241aa    MW: 28141.7 Da    PI: 8.7052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002516genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.4e-36391302102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed++++e+isw+++g++fvv+++ efak+vLpk Fkh nf+SFvRQLn+YgF+kv++++         weF +++F+kg+ke+l++i+
     Cla002516  39 FLLKTYTVVEDPATDEVISWNDDGTAFVVWQTVEFAKDVLPKLFKHCNFSSFVRQLNTYGFRKVTTTR---------WEFCNDKFQKGEKEKLCEIR 126
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Cla002516 127 RRKT 130
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3635128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3135128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5135128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-183962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEAGVSNNNK NDQKGLPSWP PRTAESEIIM RKKSTAPPFL LKTYTVVEDP ATDEVISWND  60
DGTAFVVWQT VEFAKDVLPK LFKHCNFSSF VRQLNTYGFR KVTTTRWEFC NDKFQKGEKE  120
KLCEIRRRKT WTNKQQHEID EDQRSSSSNS SSSQYNTLMD ENKRLKKENG ALSSELVSMK  180
NKCRELFDLV AKYENISKKE EEDERPKLFG VRLEEGERER KRKRAEEISE TATFLLSQSC  240
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-223013011122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818801e-148LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBankLN7132621e-148LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022928625.11e-133heat stress transcription factor B-3
SwissprotO222305e-65HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3CD461e-111A0A1S3CD46_CUCME; heat stress transcription factor B-3
STRINGXP_008460754.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.18e-62heat shock transcription factor B3