PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002581
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 709aa    MW: 81140.3 Da    PI: 10.294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002581genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014618640323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                Cp   Cgk F ++ +L++H r+H
  Cla002581 618 CPvkGCGKKFFSHKYLVQHRRVH 640
                9999*****************99 PP
2zf-C2H2130.00031676702123
                EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                y+C    Cg++F+  s++ rH r+  H
  Cla002581 676 YVCAepGCGQTFRFVSDFSRHKRKtgH 702
                899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-5585615IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035514593615IPR015880Zinc finger, C2H2-like
SMARTSM003550.0045616640IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.445616645IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-6617639IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280618640IPR007087Zinc finger, C2H2
SuperFamilySSF576677.8E-10632674No hitNo description
Gene3DG3DSA:3.30.160.606.8E-10640668IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741646675IPR007087Zinc finger, C2H2
SMARTSM003550.0014646670IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280648670IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-8664698No hitNo description
Gene3DG3DSA:3.30.160.609.2E-10669699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.62676702IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032676707IPR007087Zinc finger, C2H2
PROSITE patternPS000280678702IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MEAEAKLLAQ ELNMNHLWTD TMFRGATQDE EKRIQLALDS EEATPGNGDW AVKLGINLFY  60
SANLSHSPLY SKQMPYNSVI YNAFGRSTSA NSSGKPKVYQ RRTGKLKRVV AGKWCGKVWM  120
SNQVHPLLAK RDPQEEDVDI FSSWTMSDEK IDRKPENIQK NETVMVNRKS AGKRKMTYGS  180
GTTKKAKPIE SEDMVSDASV EDCIHQHHSI LRNKRSKFVE SNDARSDDSV EDDSCRKHGV  240
PISKGVTYCG IDDTGSDDSL GDRHNLRRGF SGFKLPKWGE IEPALSDDSL EHYSSQHRGK  300
NIKSKTEEYI ERQDALSDEC LESGSLKQYR RIPRSKQTKV LKKNAISHDI RDDSFLWHHQ  360
RPSRSKKAKS IESEDAVSED SLENNSHQHR SMPQRKPVKR TAREDAFSDG PDEDDNSLLQ  420
HRNIRRNVQF KYSEREITSD DQLDDTANQS RRRVLRSKPV KTETISQMKQ EILRPARRRA  480
SQTLKEEFAQ SLKRGGRHTL KLETPQPKIQ PATNRRGKQT KRNSKSTDLE SEEEQPGGPS  540
TRLRKRTPKP TKLSEAKPKD KKPIGKKKVK NGSSLKTPAG HRDSKARDEE SEYLCDIEGC  600
NMSFGSKQEL AMHKRNICPV KGCGKKFFSH KYLVQHRRVH MDDRPLKCPW KGCKMTFKWA  660
WARTEHIRVH TGARPYVCAE PGCGQTFRFV SDFSRHKRKT GHSTKKGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-6959170621136Lysine-specific demethylase REF6
6a58_A3e-6959170621136Lysine-specific demethylase REF6
6a59_A3e-6959170621136Lysine-specific demethylase REF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439230.10.0PREDICTED: lysine-specific demethylase REF6
TrEMBLE5GBX40.0E5GBX4_CUCME; Nucleic acid binding protein (Fragment)
STRINGXP_008439230.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.18e-71relative of early flowering 6