PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002586
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 486aa    MW: 54575.6 Da    PI: 5.1151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002586genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.5e-1412723498
               SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                +++led+ g++W+v++  +++ g+  +++GW+ F +++ L+ gDf++F    r ++ +++v+++ 
  Cla002586 12 EKVVLEDSLGQQWKVTV--SNCEGSLAFQEGWNAFSSEHSLEIGDFLIFN---RvMDLHFNVRIYT 72
               479**************..*******************************...3377777888875 PP
2B339.21.3e-124104752690
                T...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  26 h...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                +     ++e++k + l+d++ r W + +     ++  vlt+GW+ F++an++++gD ++F+++++ e+
  Cla002586 410 CsrgRRNPEKKKVVFLRDPRKRLWPILY--HEMPNVKVLTSGWEAFCSANKIQSGDECLFHVEDEFER 475
                3444567788899***************..99999**************************8765443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.014174IPR003340B3 DNA binding domain
SMARTSM010190.35274IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-13376IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-14776IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-111072IPR003340B3 DNA binding domain
CDDcd100171.42E-111271No hitNo description
Gene3DG3DSA:2.40.330.106.4E-15384473IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-9396483No hitNo description
SMARTSM010190.0092399485IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-12399473IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-10414474IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236423485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MFAATVSRLV NEKVVLEDSL GQQWKVTVSN CEGSLAFQEG WNAFSSEHSL EIGDFLIFNR  60
VMDLHFNVRI YTKTGCEKVE FAKKSNMRKR TRSSGPVLET TNEGLTNPQA SYPSVGSESN  120
VALSQDKCHM AGSRNMNVNW DKRPKCWRND EGHGPLCKID VVDDPYCFIN QNKDVGLEEN  180
RSPLLDLFSM EMQIVSPLIP SINENTTNNV AEDELNPSIP STSLNAAIIV SPVNNAPVDI  240
RGDMEALPLN ISANELINKS QCFEKAEIKT SVSDNDPCHD KTIEVPFISS AKNSDRDVEN  300
FCGTPLKMLK DSQNVPAICN TPSRDATKII KKEPLEIKTE VNNFGDCIKQ ILEPKVVKEE  360
IFETSNQSGR DNNDDTNNED PIGTPAHISC IIAKDTLSFL ELPTSLHLSC SRGRRNPEKK  420
KVVFLRDPRK RLWPILYHEM PNVKVLTSGW EAFCSANKIQ SGDECLFHVE DEFERIYEVS  480
VRKCKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419430KKVVFLRDPRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439306.10.0PREDICTED: uncharacterized protein LOC103484129
RefseqXP_008439313.10.0PREDICTED: uncharacterized protein LOC103484129
TrEMBLA0A1S3AZ520.0A0A1S3AZ52_CUCME; uncharacterized protein LOC103484129
TrEMBLE5GBX00.0E5GBX0_CUCME; Uncharacterized protein
STRINGXP_008439306.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-08B3 family protein