PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002630
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 302aa    MW: 33495.9 Da    PI: 8.7783
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002630genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-4125101278
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                C v+gC++dls +++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Cla002630  25 CLVDGCNSDLSICRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQT 101
                **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-331886IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7872299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-3923104IPR004333Transcription factor, SBP-box
PfamPF031109.2E-312598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASSTSGSSK RARGTHNGNT QPVSCLVDGC NSDLSICRDY HRRHKVCELH SKTPQVTIGG  60
LKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ TDLLPRSAAP FSYHQGPQLL  120
PFTSSQVFPS TAVSSHGWSS GVSDGATDPA AHHNRNPQLN FLEKQSLFAE ASDQSNNNNY  180
KPSQPLGFLH GGGGSRNKMI YDRFRIGVNE SDCALSLLSS PPTQIQSDHQ PQQHRNAAIS  240
LLHPLTHQNA FENSDSSSIQ IPNETHHHHH HPHGALNFPG IFGISSDNPG NQSPSTLPFH  300
WE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-2925981184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRSCRKRLDGHNRRRRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819325e-85LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132665e-85LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652208.11e-175PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A0A0LWQ41e-174A0A0A0LWQ4_CUCSA; Uncharacterized protein
STRINGXP_004154127.11e-175(Cucumis sativus)
STRINGXP_004170928.11e-175(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2446333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-54SBP family protein