PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002643
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 331aa    MW: 36664.4 Da    PI: 8.8439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002643genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.7e-10176223455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Cla002643 176 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 223
                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.08E-11170227No hitNo description
SuperFamilySSF474592.22E-17170238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-17172237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAFSYQYQP FLLDSIFLPN NPLKMGGFFD DQNFNTNCFS QFYPQDQQQQ QQQPIYHFPD  60
LSKQSPESST LVDRSDSAEP PVGNQLKPAV TVTVTSPCTK KRKSRNNSSA TSAQSKGTTE  120
STAKKQKSKG EHEGKEKDHQ KAKNGKKLEE KKILEEGGAT TGYIHVRARR GQATDSHSLA  180
ERVRREKISE RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPIL  240
FDFRMDLDGL MIQPEMTSLS SITPQLPAMA QCSIVAPPAL IDTTPSTTPS PAISAANNFP  300
LMDSSANLFL FQQGISANNG YSQSSQVNLQ F
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819328e-87LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132668e-87LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440060.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A1S3B0V00.0A0A1S3B0V0_CUCME; transcription factor bHLH137
STRINGXP_008440060.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-55bHLH family protein