PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002675
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 277aa    MW: 31224.9 Da    PI: 7.8511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002675genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05106125120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C+ C+k+F+r  n++ H+
  Cla002675 106 FSCSVCTKTFNRYNNMQMHM 125
                89*****************9 PP
2zf-C2H216.23e-05191213123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +Cgk+F  + + ++H +++
  Cla002675 191 FSCRKCGKPFAVRGDWRTHEKNC 213
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.9E-5101129No hitNo description
SMARTSM003550.24106128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5106125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM00355220154186IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.59E-6174211No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5177211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565191211IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQQSWKLSCI SSSESGCLEG DEEGEESIFL SLSPPGQRHS FSSKQQQQQS SLQNPNHHQN  60
AAAVTVAMHI GPPPLSSSSA PAVRPLDAAH YWIPTPAQIL VGPTQFSCSV CTKTFNRYNN  120
MQMHMWGHGS EYRKGPESLR GSKPASSMLK LPCYCCAEGC KNNIEHPRSR PLKDFRTLQT  180
HYKRKHGAKP FSCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS LKDHVRAFGD  240
GHAPHTVQLC EVEDDDDWDD HDDDDHINGP QPWSIYH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818921e-179LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132631e-179LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140390.11e-163PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0A0KQ061e-162A0A0A0KQ06_CUCSA; Uncharacterized protein
STRINGXP_004140390.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-108C2H2-like zinc finger protein