PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002704
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 236aa    MW: 26996.5 Da    PI: 8.3286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002704genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11112152451
        AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Cla002704 112 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 152
                9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-4110169IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-8111155IPR016177DNA-binding domain
PfamPF008479.8E-6112153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-6113159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVSLRRRKLL GLCTGKGLFV APVLKFSENL TTEDHVHCTN SVSVYPICSD EVNKIKENSI  60
ANLEPESSGL SVLDTSKEKN DTTNDEPIAD PPIKRRKRHR RKHFPDESFL MRGVYFKNMK  120
WQAAIKVDKK QIHLGTVGSQ EEAARLYDRA AFMCGREPNF ELPEAEKQEL RKFNWDEFLA  180
MTRHAITNRK QKRVSPESKK SKLSSPGNDD DYSNKRHDEF DDLSALEDVE PVASTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818291e-75LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBankLN7132581e-75LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651656.11e-141PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A0A0LCE71e-140A0A0A0LCE7_CUCSA; Uncharacterized protein
STRINGXP_004166807.11e-141(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-41ERF family protein