PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002782
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GeBP
Protein Properties Length: 213aa    MW: 25242.8 Da    PI: 7.9386
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002782genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.19.9e-1351141797
     DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkks.isfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 
                w e+Dei++L+ l +f a   k      +afye vk + ++ +v+ s++++Ki  +K+++ + ++k  ++++e ++  +h  ++f ls++iWg
  Cla002782  51 WEEDDEITVLKQLYEFSAGSCKGL--YSKAFYEHVKPKlMNREVTMSEMSSKIGGFKNQYLEWRRKgNSNNHELKLLGPHRLQVFVLSNRIWG 141
                ****************76655544..5689******6626789*******************999966778899******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-1251141IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSGSDRSDKE YKIESDVESS EEYSEYCRSK RRRKAQRRRK KRSSSGGVLE WEEDDEITVL  60
KQLYEFSAGS CKGLYSKAFY EHVKPKLMNR EVTMSEMSSK IGGFKNQYLE WRRKGNSNNH  120
ELKLLGPHRL QVFVLSNRIW GDYDEGMKHL EGFREFLEEL EIDINCLMPS CLEYLKKEWE  180
VQMLMYIQLL SIKSNFDAKL RELILYVKSD SPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12940KRRRKAQRRRKK
22941KRRRKAQRRRKKR
33141RRKAQRRRKKR
43641RRRKKR
53642RRRKKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023521141.15e-55probable transcription factor At1g61730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-07DNA-binding storekeeper protein-related transcriptional regulator