PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002800

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 423aa MW: 46253.9 Da PI: 9.5183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002800	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	188	210	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +++L+ H+++ H Cla002800 188 PCPECGEIFMKPETLELHQSVrH 210 7******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	187	210	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.808	187	215	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.45E-25	212	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.4E-19	213	420	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MASAMAKPKI QRKLSRQSHE NQKPKPPSWA VVKGIFSCKY LQPQQQQQQQ HHQLPRKEKQ 60 QEQATEEISK NCKKMRCSGS LCSNTKITHR LEAAASPEVH KKRVLTSRNN ESSSSSRSSK 120 APPLNEQTVS ATCSSLSASS SSSNSSNGAS SFRGMPFRRF YGCYECKMVI DPVIGMTRDP 180 SLRATICPCP ECGEIFMKPE TLELHQSVRH AVSELGPEDT SKNIVEIIFQ SSWLKKQTPI 240 CKIERILKVQ NTPKTISKFE EYRDSIKAKA TKLPKKYPRC IADGNELLRF HCTTLGCSLG 300 LNGSSNLCSS IPQCNVCSII KNGFKMAAEA TGGEAGKGIL TTATSGKAHD SAGVSSESGN 360 GNDKRAMLVC RVIAGRVKKS SEGSMEDYDS LAGAAGMYSN LDELYVFSPK AILPCFVVIY 420 GGF

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MASAMAKPKI QRKLSRQSHE NQKPKPPSWA VVKGIFSCKY LQPQQQQQQQ HHQLPRKEKQ  60
QEQATEEISK NCKKMRCSGS LCSNTKITHR LEAAASPEVH KKRVLTSRNN ESSSSSRSSK  120
APPLNEQTVS ATCSSLSASS SSSNSSNGAS SFRGMPFRRF YGCYECKMVI DPVIGMTRDP  180
SLRATICPCP ECGEIFMKPE TLELHQSVRH AVSELGPEDT SKNIVEIIFQ SSWLKKQTPI  240
CKIERILKVQ NTPKTISKFE EYRDSIKAKA TKLPKKYPRC IADGNELLRF HCTTLGCSLG  300
LNGSSNLCSS IPQCNVCSII KNGFKMAAEA TGGEAGKGIL TTATSGKAHD SAGVSSESGN  360
GNDKRAMLVC RVIAGRVKKS SEGSMEDYDS LAGAAGMYSN LDELYVFSPK AILPCFVVIY  420
GGF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022990074.1	0.0	uncharacterized protein LOC111487079
TrEMBL	A0A0A0KN18	0.0	A0A0A0KN18_CUCSA; Uncharacterized protein
STRING	XP_004140330.1	0.0	(Cucumis sativus)
STRING	XP_004161649.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8473	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-85	C2H2-like zinc finger protein