PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002917

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 231aa MW: 24484.4 Da PI: 6.9385

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002917	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.5e-39	37	138	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++C++ap+f+++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+aela++++ Cla002917 37 PCGACKFLRRKCVSGCIFAPHFASDQgAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQA 136 7***********************89********************************************************************99 PP DUF260 100 el 101 +l Cla002917 137 QL 138 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.932	36	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	37	135	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MADADQFPRR KPLGNKRASA ANRNPDSATA TVTALAPCGA CKFLRRKCVS GCIFAPHFAS 60 DQGAARFAAV HKVFGASNVS KLLLHIPVSR RNDAVVTISY EAQARLSDPV YGCVSTVLAL 120 QQQVASLQAE LAAVQAQLIS SRLAFAAAIQ NSQPSQVGAL QPAYSNNSSI SVSASTSAHN 180 AINLSSFASN YDLPTETAPS PHHLEPLHLP HQPIEDEEDE ENSQLPAIFA D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-38	27	154	1	127	LOB family transfactor Ramosa2.1
5ly0_B	8e-38	27	154	1	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-103	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-103	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136784.1	1e-145	PREDICTED: LOB domain-containing protein 20
Swissprot	Q9SRV3	2e-74	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A0A0LCJ9	1e-143	A0A0A0LCJ9_CUCSA; Uncharacterized protein
STRING	XP_004136784.1	1e-144	(Cucumis sativus)
STRING	XP_004159662.1	1e-144	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-54	LOB domain-containing protein 20