PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002923
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 253aa    MW: 29689.8 Da    PI: 8.9204
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002923genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++++isw+++g++fvv+ ++efa+++Lp+ Fkh+nf+SFvRQLn+YgF+k+ +++         weF +++F+kg ke l++i+
     Cla002923  27 FLAKTYMLVEDPTTDDIISWNSDGTAFVVWRPQEFATDLLPTLFKHNNFSSFVRQLNTYGFRKIATSR---------WEFCNDKFQKGCKERLCEIR 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Cla002923 115 RRKA 118
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3620111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.45E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEEAIVGLGN VCENYVGPAR KPTPPPFLAK TYMLVEDPTT DDIISWNSDG TAFVVWRPQE  60
FATDLLPTLF KHNNFSSFVR QLNTYGFRKI ATSRWEFCND KFQKGCKERL CEIRRRKAWS  120
NKRQHNNNAK VIQATHQVDR DEDQRSSSTT SSFDDQYMML VDENKRLKKE NGVLSFELTN  180
MKKKCRELLD LVAKYEFAVI TGDEKKEDEM KPNLKLFGVK LEIEEEDEMV IRQNKRKRSI  240
YQNKHFLLLQ SSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B9e-20251163105Heat shock factor protein 2
5d8l_B9e-20251163105Heat shock factor protein 2
5d8l_D9e-20251163105Heat shock factor protein 2
5d8l_F9e-20251163105Heat shock factor protein 2
5d8l_H9e-20251163105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818414e-54LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132584e-54LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443318.11e-139PREDICTED: heat stress transcription factor B-3-like
SwissprotO222304e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3B7P71e-138A0A1S3B7P7_CUCME; heat stress transcription factor B-3-like
STRINGXP_008443318.11e-139(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-71heat shock transcription factor B3