PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla003039

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 240aa MW: 27960.6 Da PI: 5.4771

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla003039	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143	1.7e-44	16	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppGfrF Pt+eelv++yL+++++++ e ++vi+ ++iy++ePwdLpk +++++++w+fF+ r++++++g r++r+t++gyWkatg+ v+s+ + Cla003039 16 PPGFRFYPTEEELVSFYLRHQLQTELPEKHRVIPLLNIYNFEPWDLPKsageLCRGDSEQWFFFVARQERETRGGRPSRTTAAGYWKATGSPVYVYSSAN 115 9**********************9999999***********645653444777************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++glkkt+vfy grap+g+kt+W m+eyr+ Cla003039 116 KVIGLKKTMVFYMGRAPTGTKTKWKMNEYRA 146 ***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-48	11	163	IPR003441	NAC domain
PROSITE profile	PS51005	48.818	15	165	IPR003441	NAC domain
Pfam	PF02365	3.0E-23	16	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSMPMEEEEE SIHEYPPGFR FYPTEEELVS FYLRHQLQTE LPEKHRVIPL LNIYNFEPWD 60 LPKSAGELCR GDSEQWFFFV ARQERETRGG RPSRTTAAGY WKATGSPVYV YSSANKVIGL 120 KKTMVFYMGR APTGTKTKWK MNEYRAIDDS AKLRHEFSLC RIYVISGCFR AFDRRPMEVI 180 AAAQKTADRK MKEKVTSPET SCAAAAMAHC DGSGSNWRMD EDEEFEESIW EWEKIDWAEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-33	16	163	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-33	16	163	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-33	16	163	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-33	16	163	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	8e-33	16	163	21	166	NAC domain-containing protein 19
3swm_B	8e-33	16	163	21	166	NAC domain-containing protein 19
3swm_C	8e-33	16	163	21	166	NAC domain-containing protein 19
3swm_D	8e-33	16	163	21	166	NAC domain-containing protein 19
3swp_A	8e-33	16	163	21	166	NAC domain-containing protein 19
3swp_B	8e-33	16	163	21	166	NAC domain-containing protein 19
3swp_C	8e-33	16	163	21	166	NAC domain-containing protein 19
3swp_D	8e-33	16	163	21	166	NAC domain-containing protein 19
4dul_A	7e-33	16	163	18	163	NAC domain-containing protein 19
4dul_B	7e-33	16	163	18	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	7e-96	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	7e-96	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461272.1	1e-155	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-81	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3CEB6	1e-154	A0A1S3CEB6_CUCME; NAC domain-containing protein 90-like
STRING	XP_008461272.1	1e-155	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-80	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]