PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003202
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 206aa    MW: 23690.2 Da    PI: 9.9564
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003202genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.63.4e-08182203120
       GATA   1 Cs..nCgttkTplWRrgpdgnk 20 
                C+  nC+t  Tp+WR+gp g+k
  Cla003202 182 CTnyNCNTNFTPMWRKGPLGPK 203
                55559***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.0E-4180201IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDSRSQLWRQ MKSHECDHHR RFHSETQVDL TLRLGFPNAN DAGERPDIDH NNPFFNHHQV  60
MMNNHGLASS GGRNNEMMSE PNYNPHQIVW SKELKTYVLK SNNFGQLHPS SYSSTHQAKP  120
IGITPNNSPN LPLPKHNNDL YTLLNPASRI TDDHEAEASS GGRRRGSRRR RVSANNDIER  180
RCTNYNCNTN FTPMWRKGPL GPKVRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-100LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-100LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022985849.15e-91GATA zinc finger domain-containing protein 8-like
TrEMBLA0A0A0L0J02e-69A0A0A0L0J0_CUCSA; Uncharacterized protein
STRINGXP_004162027.11e-100(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-07GATA transcription factor 29