PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003566
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 234aa    MW: 26565 Da    PI: 6.985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003566genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  +  +G  +W+++++  g++R++k+c++rw +yl
        Cla003566 14 KGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding513.3e-1672111647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
        Cla003566  72 EAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-22562IPR009057Homeodomain-like
PROSITE profilePS5129414.089961IPR017930Myb domain
SuperFamilySSF466891.63E-2711108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
CDDcd001678.64E-101661No hitNo description
PROSITE profilePS5129426.64262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2463117IPR009057Homeodomain-like
SMARTSM007173.4E-1466114IPR001005SANT/Myb domain
PfamPF002491.8E-1472111IPR001005SANT/Myb domain
CDDcd001677.57E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVTFIL TYGHCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL DEAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
LDPVTHQPLK KQQTESCSQG SCTNSSVAIT PLSEANSTEK EQPLTSQTWV EALQDDSWSN  180
FPTWGSEIYS DFGLYSSEDS LNRLLDYYKE LGDEDFELGS LGDFSKQLVG IGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-137LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-137LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143714.11e-150PREDICTED: protein ODORANT1
SwissprotQ50EX68e-88ODO1_PETHY; Protein ODORANT1
TrEMBLA0A1S3CT621e-144A0A1S3CT62_CUCME; protein ODORANT1
STRINGXP_004143714.11e-149(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.16e-88myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]