PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003618
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 241aa    MW: 26425.9 Da    PI: 7.3456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003618genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2084134255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp+++g  +r++lg+++ta eAaka+++a+ k++g
  Cla003618  84 HYRGVRRRP-WGKFAAEIRDPNKRG--ARVWLGTYDTAIEAAKAYDRAAFKMRG 134
                7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-3283143IPR001471AP2/ERF domain
SMARTSM003805.6E-3784148IPR001471AP2/ERF domain
CDDcd000188.42E-3184142No hitNo description
SuperFamilySSF541718.5E-2384143IPR016177DNA-binding domain
PROSITE profilePS5103224.44784142IPR001471AP2/ERF domain
PfamPF008472.4E-1584134IPR001471AP2/ERF domain
PRINTSPR003671.3E-138596IPR001471AP2/ERF domain
PRINTSPR003671.3E-13124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDDASTLDLI RQHLLNDFNS IEAFASNLNL DNNNGIEPQI SAAPSKVGPR RPSLNVAIPP  60
KSYSVQSASG TAIEPQSDLG MSRHYRGVRR RPWGKFAAEI RDPNKRGARV WLGTYDTAIE  120
AAKAYDRAAF KMRGSKAILN FPLEAGKEVE EPPSTAEIGR KRRRESEVGE MGNKAMKKEE  180
SLETEDSSVT EQMGVPATVC PLTPSCWATV WDSDVKGIFS VPPLSPLSPY PLMGYSQCTV  240
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-3082143364ATERF1
3gcc_A7e-3082143364ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008436974.11e-136PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLA0A1S3ATH21e-135A0A1S3ATH2_CUCME; ethylene-responsive transcription factor ERF105
STRINGXP_008436974.11e-136(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-58ERF family protein