PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003821
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 179aa    MW: 19637.1 Da    PI: 9.8793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003821genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.7e-06671051154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cla003821  67 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 105
                5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.57656105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-866110No hitNo description
SuperFamilySSF474592.75E-1266121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003767111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1070113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKDVRPSYFP ASYNTAAGFA DKSKNISEVG DSVTTVGKKS GNDHNQQSAA AKRPRNETPS  60
PLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVS VLSTPYLKSG  120
AAVQQQHQQQ RCEKSKEGEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6825531e-59LN682553.1 Cucumis melo genomic scaffold, unanchored_scaffold00714.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650539.11e-108PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT39e-68BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0A0L5641e-107A0A0A0L564_CUCSA; Uncharacterized protein
STRINGXP_004151277.11e-107(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]