PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003872
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 205aa    MW: 22144.7 Da    PI: 6.2771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003872genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.5e-06176199629
                HHHHHHHHHHHHHHHHHHHCTSCC CS
        HLH   6 nerErrRRdriNsafeeLrellPk 29 
                +++Er RR ri +++ +L+e++P+
  Cla003872 176 SIAERVRRTRISDRIRKLQEVVPN 199
                689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.515170205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-5173202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-5175202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQSTTGAGAT GSRSSGGGTG GGLARFRSAP AAWLEALLED DEEDPLKPNH CLTQLLAADS  60
SDLDSPADQP LFDPNPSPAF HRQNSSPAEF LAASGIGEGF YTAYALNSSP TLDISPTSKR  120
AREVDPQNFS PKFSPQLKRE GSGVSSLIDM EMEKLLEDSV PCRVRAKRGC ATHPRSIAER  180
VRRTRISDRI RKLQEVVPNM DKFLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-115LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-115LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141566.11e-117PREDICTED: transcription factor bHLH81 isoform X1
SwissprotQ9C8P88e-60BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0A0KY011e-116A0A0A0KY01_CUCSA; Uncharacterized protein
STRINGXP_004168264.11e-116(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-38bHLH family protein