PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003932
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 586aa    MW: 64988.4 Da    PI: 4.9977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003932genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.13.5e-1382185771374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav+++dl+la+al++r+  la +++ +m+++a++f+eALa+r++r        l+p++  ++++s++l++   f+e +P+lkf+h+taNq
  Cla003932 218 LVHALMACAEAVQQNDLNLAEALVKRIGYLAISQAGAMRKVATFFAEALARRIYR--------LRPENPLDHSVSDRLQM--HFYESCPYLKFAHFTANQ 307
                689****************************************************........77777766678888776..5***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
                aIlea+eg++rvH+iDf+++ G+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p  
  Cla003932 308 AILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVEFEYRGFVANSLADLDASMLELRPse 407
                **************************************************************************************************88 PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 E+++Vn+v++lh+ll+++++le+    vL++vk+++P++++vveqea+hn++ F++rf+e+l+yys+lfdsle +    +++++ +++++lg++i+nvv
  Cla003932 408 VESVVVNSVFELHKLLARPGALEK----VLSVVKQMKPEIITVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGS---PNNQDKIMSEMYLGKQICNVV 500
                899*********************....**********************************************99...6889999999*********** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                acega+r+erhetl +Wr rl++aGF+p++l+++a kqa++ll+ ++ ++gy+vee++gsl+lgW++rpL+++SaW+
  Cla003932 501 ACEGADRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGsGEGYQVEENNGSLMLGWHTRPLIATSAWK 577
                ****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.5E-3446113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.3E-3346119No hitNo description
PROSITE profilePS5098567.102192556IPR005202Transcription factor GRAS
PfamPF035141.2E-135218577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MKREHHHLHP RPEPLSMAAV PNGESYLNTG KAKLWEEEAQ LDGGADELLA VLGYKVKSSD  60
MAEVAQKLEQ LEEAMCQNQD TGLSHLAFDT VHYNPSDLST WLESMLMELH PTPNFAPLPP  120
PSQLDDSSFL APAESSTITS IDIDPQRQTS NRIFEESSSS DYDLKAITSS AIYSPRENKR  180
LKSSESDSDL FSTSAIGASD SVTRPVVLVD SQENGIQLVH ALMACAEAVQ QNDLNLAEAL  240
VKRIGYLAIS QAGAMRKVAT FFAEALARRI YRLRPENPLD HSVSDRLQMH FYESCPYLKF  300
AHFTANQAIL EAFEGKKRVH VIDFSMNRGM QWPALIQALA LRPNGPPAFR LTGIGPPAPD  360
NSDYLQEVGW KLAELAEAIH VEFEYRGFVA NSLADLDASM LELRPSEVES VVVNSVFELH  420
KLLARPGALE KVLSVVKQMK PEIITVVEQE ANHNGPVFVD RFTESLHYYS TLFDSLEGSP  480
NNQDKIMSEM YLGKQICNVV ACEGADRVER HETLTQWRTR LSSAGFEPIH LGSNAFKQAS  540
MLLALFGSGE GYQVEENNGS LMLGWHTRPL IATSAWKLGN NPVVAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6421357614378Protein SCARECROW
5b3h_A8e-6421357613377Protein SCARECROW
5b3h_D8e-6421357613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467128.10.0PREDICTED: DELLA protein GAIP-B
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A1S3CST40.0A0A1S3CST4_CUCME; DELLA protein GAIP-B
STRINGXP_008467128.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein