PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla003994

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 220aa MW: 24257.1 Da PI: 4.3247

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla003994	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.9	1e-35	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA r+rdP yG+v++i++lqq++++l++e++ l++ Cla003994 13 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGS 112 6********************98868*****************************************************************99988 PP DUF260 100 e 100 + Cla003994 113 Q 113 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.582	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-33	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MTGLNSSNFS SSSCGACKFL RRKCSDQCVF APFFSYDEAT SHFAAVHKVF GASNVSKLLL 60 HLPIHIRSHA ALTVAYEALE RMRDPTYGCV AHIFALQQEV ASLQEEIEIL GSQIANFTAT 120 GGSVAGVENP FIDQLQVSQQ LKDFGMMNRD DYQNELLSEL PYQSFDNIQN DNNGQMISPL 180 FCLGEEDGVF GFCSSNDVVE RSACDVSFEE SFVGYPWVVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	6	129	4	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	6	129	4	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681897	1e-104	LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBank	LN713264	1e-104	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147712.1	1e-137	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	2e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A0A0KNX8	1e-135	A0A0A0KNX8_CUCSA; Uncharacterized protein
STRING	XP_004161921.1	1e-137	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-58	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]