PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004026
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 172aa    MW: 18393.8 Da    PI: 9.25
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004026genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0013153123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ Fs+   L  H  +H
  Cla004026 31 FECKTCNRQFSSFQALGGHRASH 53
               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.8E-1029103No hitNo description
PfamPF139121.2E-123055IPR007087Zinc finger, C2H2
SMARTSM003550.23153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3463158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
PfamPF139127.2E-1080105IPR007087Zinc finger, C2H2
SMARTSM003550.581103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.91281103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MANCLMLLSR NTASTTADFE SSSLSSPNRV FECKTCNRQF SSFQALGGHR ASHKKPRIVG  60
GDGGNSDGSS SQGSPTKPKT HECSICGLEF AIGQALGGHM RRHRATTLLT DHARLTNHPN  120
ILSPPPRSQP PVVKKTNGGG TILCLDLNLT PSENDSKFLQ LGKSISMVDC LF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818971e-154LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBankLN7132641e-154LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023545353.11e-112zinc finger protein ZAT12-like
TrEMBLA0A1S3CF733e-76A0A1S3CF73_CUCME; zinc finger protein ZAT12-like
STRINGXP_008461644.15e-77(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-37C2H2 family protein