PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004039
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 265aa    MW: 30566.8 Da    PI: 8.0741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004039genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+++++  g+ R++k+c++rw +yl
        Cla004039 14 RGPWTVEEDHKLMNFILNNGIHCWRLVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding56.18.3e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
        Cla004039  67 RGAFTEMEENQIIHLHSLLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.011961IPR017930Myb domain
SuperFamilySSF466892.02E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-81363IPR001005SANT/Myb domain
PfamPF002491.9E-121461IPR001005SANT/Myb domain
CDDcd001674.74E-61661No hitNo description
PROSITE profilePS5129426.58162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2665117IPR009057Homeodomain-like
SMARTSM007179.9E-1766114IPR001005SANT/Myb domain
PfamPF002493.7E-1667110IPR001005SANT/Myb domain
CDDcd001676.65E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTVE EDHKLMNFIL NNGIHCWRLV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEMEENQIIH LHSLLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKQLG  120
LDPLTHKKLT EKTDRLKEKL FIASNPFRKQ EAIMPNFDFE TKEINQVASH MISSDDGSSN  180
LVCKGIGYEM WTDQLENDSN VSFSLEYCSS MNESLSIIKQ NSIQFDSLDS LPSWDDGVPK  240
FNQLEKDDIY SLGNGGGYYV DTFSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818570.0LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450053.10.0PREDICTED: transcription repressor MYB6
SwissprotQ9C7U75e-72MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1S3BP240.0A0A1S3BP24_CUCME; transcription repressor MYB6
STRINGXP_008450053.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-82myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]