PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla004120

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 258aa MW: 28309.3 Da PI: 6.4027

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004120	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.7	1.3e-17	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Cla004120 60 PVFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 110 579**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.1E-12	60	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.616	61	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-31	61	119	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	61	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	61	119	IPR016177	DNA-binding domain
PRINTS	PR00367	1.0E-9	62	73	IPR001471	AP2/ERF domain
CDD	cd00018	7.67E-31	62	120	No hit	No description
PRINTS	PR00367	1.0E-9	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
METESRILNP SPPPSPSSSG SLSTVPDHHP SSSSSSSAVE SNRKRGKRPR ENNNNNSKHP 60 VFRGVRMRAW GKWVSEIREP RKKSRIWLGT FSTPEMAARA HDVAALAIKG TAAILNFPEL 120 AHHFPRPASS SPRDVQAAAA KAAAMEIPTP SLFSSSSSAS SSSSSSSALC PSSPEELSEI 180 LELPSLGTSY ETAELGNEFV FVDSVEGWLY SYPWYNRVNN ADHQVQEDYG FFKEQILMAD 240 YTDTLIPSST FEAFLWQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	56	118	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	1e-148	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	1e-148	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023516296.1	1e-109	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	1e-67	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S3CI75	1e-106	A0A1S3CI75_CUCME; ethylene-responsive transcription factor TINY-like
STRING	XP_008462760.1	1e-107	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-53	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]