PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004274
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 225aa    MW: 24952.8 Da    PI: 8.3165
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004274genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.6e-393392261
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ 
  Cla004274 33 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 92
               6899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-253491IPR003851Zinc finger, Dof-type
PfamPF027011.5E-333491IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0123791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSAHWPQVE VKSMELEEEG IKAVVERKAK ARKDQILNCP RCNSNNTKFC YYNNYSLSQP  60
RYFCKSCRRY WTAGGSLRNI PVGGASRKNK RPSANFSSPP SKNNQKNCYN DNNNNGDDDD  120
HQGISQLNIN TTCSSTITNT ATSCCWLSSD DHMNNQIMLR SSGIMSQREL IPFIPMPAPA  180
PPQPSTAAAL EDFKQLSTII STDQNGAKLG DVPAFWNGIF GGGSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633RKAKARKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146271.11e-114PREDICTED: dof zinc finger protein DOF1.8-like
RefseqXP_011651310.11e-114PREDICTED: dof zinc finger protein DOF1.8-like
RefseqXP_011651312.11e-114PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBLA0A0A0L9J31e-113A0A0A0L9J3_CUCSA; Uncharacterized protein
STRINGXP_004146271.11e-114(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2448433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.35e-34Dof family protein