PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla004308

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 321aa MW: 36128.1 Da PI: 7.777

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004308	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.9	1.1e-08	243	281	17	55
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 A+rsR RK+++i+eLe+kv++L+ae ++ ele l+++ Cla004308 243 AQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQ 281 89******************************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0011	232	291	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.87E-16	236	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-6	243	286	No hit	No description
SuperFamily	SSF57959	2.0E-6	243	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MANSKGSSNV RSFMSSGKHA LLPPKSPFPS VSPSYTEYVP NSVIGAKAVQ RPRDGNSYHQ 60 RTSSESILIE EQPSWLDDLL NEPETPVRRV GHRRSSSDSF AYTDAANVNF DSIMQEEFRY 120 ANAIPGHSWL SQEFDHQRDA RHVSFYTEAN IAKQKNRVWE SSLSTMNNPI ALHSPRENIG 180 IHTSGPLNTP QEADGLPSTA SEKQDSTESG SHDPKVSSDR KDASHGKSSV SDTENKRAKQ 240 QFAQRSRVRK LQYIAELERK VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLENLA 300 QEQLIKYCKL LFPRYLAFFV C

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	0.0	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146254.1	0.0	PREDICTED: uncharacterized protein At4g06598
Swissprot	Q8W3M7	1e-65	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A0A0L9F3	0.0	A0A0A0L9F3_CUCSA; Uncharacterized protein
STRING	XP_004146254.1	0.0	(Cucumis sativus)
STRING	XP_004159870.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	5e-95	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]