PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004328
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 295aa    MW: 33789.6 Da    PI: 8.1943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004328genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-082469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++  a + + ++   +W ++a++++ g+t  +++  ++ 
        Cla004328 24 EWTKEENKRFESALAIYDKEtpdRWFKVAAMIP-GKTVGDVIKQYRE 69
                     7*****************99*************.******9999986 PP
2Myb_DNA-binding43.86e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++++  ++G+g+W+ I+r + + +t+ q+ s+ qky
        Cla004328 125 PWTEEEHKQFLRGLLKYGKGDWRNISRNFVNSKTPTQVASHAQKY 169
                      8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4692074IPR017884SANT domain
SMARTSM007179.9E-102173IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-112377IPR009057Homeodomain-like
PfamPF002495.1E-72469IPR001005SANT/Myb domain
CDDcd001671.64E-72470No hitNo description
Gene3DG3DSA:1.10.10.609.3E-12116175IPR009057Homeodomain-like
PROSITE profilePS5129419.365118174IPR017930Myb domain
SuperFamilySSF466892.01E-16120173IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-17121173IPR006447Myb domain, plants
SMARTSM007177.1E-12122172IPR001005SANT/Myb domain
PfamPF002491.9E-11125169IPR001005SANT/Myb domain
CDDcd001671.02E-9125170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
METLYPSSHL SSSAWFVLDN SSTEWTKEEN KRFESALAIY DKETPDRWFK VAAMIPGKTV  60
GDVIKQYREL EEDVCEIEAG RFPIPGYDLA SSFSFEFVDD RNFDAYRRKS SVGRGSDHER  120
KKGVPWTEEE HKQFLRGLLK YGKGDWRNIS RNFVNSKTPT QVASHAQKYF MRQLSGGKDK  180
RRPSIHDITT VNLTEATASE NEKLSSLDQL SKLPSLQKSP CYQKLLFDWN RSSNGELLGL  240
GPNYGDRLVS FPSGIAANGI KNEQDQELNS AYYGTYSKHH KSIFQFEPSR HQIYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-152187773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8703040.0AJ870304.1 Cucumis sativus mRNA for somatic embryogenesis MYB 1 transcription factor (SEM1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267652.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLQ5NDD20.0Q5NDD2_CUCSA; Somatic embryogenesis MYB 1 transcription factor
STRINGXP_004150230.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.16e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]