PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004408
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 267aa    MW: 31211.2 Da    PI: 10.158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004408genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS235.72e-721266120373
       GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...........gEalaVn 205
                ++G+QWp+L+qaLa+R  ++p+lRiT+ g     + + l++tg+rL+kfA++lg++f+f++l   + ++ + + + +L + p                V 
  Cla004408   1 MHGVQWPPLMQALADR-FPSPMLRITATGL----DLNFLHKTGDRLSKFAQSLGLRFQFHPLlllHDRDHHRVIPAALTLLPrrssrrqlcslLAQ--VP 93 
                58*************9.788**********....9**************************98855558888889999776655554443211111..22 PP

       GRAS 206 lvlql...hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                + ++l   h+l+ +++ +++  + +L+ +k l+Pkvv+++e+ea+ n++ F++rf+eal++ys +fdslea+lp++s+er  vE++++grei++vv+ eg
  Cla004408  94 SNYHLthkHELYIQRQLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIEDVVSGEG 193
                222221113344555555667899**************************************************************************** PP

       GRAS 303 ae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                ++ rr+  e++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl+lgW+++pL+svS+W
  Cla004408 194 NKkRRQHYERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNQPLFSVSSW 266
                98789999***************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.9E-701266IPR005202Transcription factor GRAS
PROSITE profilePS5098534.7491246IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MHGVQWPPLM QALADRFPSP MLRITATGLD LNFLHKTGDR LSKFAQSLGL RFQFHPLLLL  60
HDRDHHRVIP AALTLLPRRS SRRQLCSLLA QVPSNYHLTH KHELYIQRQL MKEDVRVLLH  120
KIKALNPKVV TIAEKEANFN HPLFMQRFIE ALNHYSLIFD SLEATLPPNS RERLAVEQVW  180
FGREIEDVVS GEGNKKRRQH YERYESWEIM LKSLGFSNIP LSPFALSQAK LLLRLHYPSE  240
GYHLQILHDS LFLGWQNQPL FSVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-331266138378Protein SCARECROW
5b3h_A4e-331266137377Protein SCARECROW
5b3h_D4e-331266137377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448967.11e-157PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-82SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1S3BLL31e-155A0A1S3BLL3_CUCME; scarecrow-like protein 18
STRINGXP_008448967.11e-156(Cucumis melo)
STRINGXP_004159489.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-81GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]