PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004425
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 272aa    MW: 30946.8 Da    PI: 4.2153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004425genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166283223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C+ C++ F++   L  H+r+H
  Cla004425 62 SCKVCNREFNSIKALYGHMRSH 83
               8********************9 PP
2zf-C2H212.20.00054204226123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ Cgk F ++  L  H ++H
  Cla004425 204 YKCNSCGKEFGSHQALGGHKSSH 226
                9**************99999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF052857.1E-810201IPR007949SDA1 domain
Gene3DG3DSA:3.60.40.105.5E-41285IPR001932PPM-type phosphatase domain
PROSITE profilePS501579.1825988IPR007087Zinc finger, C2H2
PROSITE patternPS0002806183IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-86183No hitNo description
SMARTSM003550.0216183IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-86383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.60.40.105.5E-4125139IPR001932PPM-type phosphatase domain
SuperFamilySSF576671.04E-8199226No hitNo description
PROSITE profilePS5015711.385204231IPR007087Zinc finger, C2H2
PfamPF139124.8E-9204228IPR007087Zinc finger, C2H2
SMARTSM003550.12204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKVYWNGEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEERTK  60
CSCKVCNREF NSIKALYGHM RSHPNRTWKG IQPPISISSS ISSSLSSSSL PLPLPSWSLT  120
AKRGRKGIGS VAVVAAVSSS SSASEVEPKS LFALIEAVSQ QKEINVSSPP MKKMKKIELK  180
KNDLDNSLIC ENGIHQLKEV KKLYKCNSCG KEFGSHQALG GHKSSHYKAK IQLLVSDLTR  240
IPHERRMLNF DLNELPPKDD DDDNGNGEAK QA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818602e-34LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132602e-34LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449183.12e-42PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133
TrEMBLA0A0A0L2N14e-48A0A0A0L2N1_CUCSA; Uncharacterized protein
STRINGXP_008449183.19e-42(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2448733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-08C2H2 family protein