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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla004426 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 234aa MW: 25381.5 Da PI: 9.7317 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.7 | 4.2e-05 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC++C+k+Fs++ + H ++H
Cla004426 146 YKCNICSKVFSSPRAFGGHKSSH 168
9************9999998887 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.05E-5 | 143 | 171 | No hit | No description |
| PROSITE profile | PS50157 | 9.619 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 5.7E-7 | 146 | 170 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 234 aa Download sequence Send to blast |
MDHEGNGLRI KIKVRNGSND DGKKQFCSIG HMRIHSETTM EKGLLFQPST PAAATRRSSP 60 SSSFSSSSSA VVDCSISLPS WSLTGRRGRK STSTTAAAAA TTTVLISDVL PGAKRMKIET 120 HSDNEKLPKK KAHSEENKNE VMEKEYKCNI CSKVFSSPRA FGGHKSSHYK ANKTDTATTN 180 KTTANTTVGT TFEPLSLDSS TDQTAGPKRV MDFDLNQLPT VDKEAILESC ILHL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011652725.1 | 4e-51 | PREDICTED: putative protein TPRXL | ||||
| TrEMBL | A0A0A0L1Z9 | 4e-66 | A0A0A0L1Z9_CUCSA; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF31082 | 2 | 2 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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