PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004450
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 321aa    MW: 35527.9 Da    PI: 6.345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004450genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
        Cla004450 14 KGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding46.48.9e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
        Cla004450  68 GQFSDMEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.87965IPR017930Myb domain
SuperFamilySSF466894.4E-2911108IPR009057Homeodomain-like
SMARTSM007175.9E-141363IPR001005SANT/Myb domain
PfamPF002494.0E-171461IPR001005SANT/Myb domain
CDDcd001671.74E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2365116IPR009057Homeodomain-like
SMARTSM007173.2E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.76666116IPR017930Myb domain
PfamPF002499.0E-1368110IPR001005SANT/Myb domain
CDDcd001674.70E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRVPCCEKE NVKKGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDMEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLTDMG  120
IDPVTHKPIS HLLAEIATTW APPQAAHLAE AALGCFKDEM LHLLTKKRVD FQLQQANNVP  180
PGSSTGTYIH GEQNEKDGTV ENIKLGLARA IQQPDLISPY KPWSSTDAAG TSNCFPASTS  240
GFQYAPLSFG NEGDGSSWSQ SICTGSTCTA GEQQGQLHEI LEETEEELSE GGKEIRNGTS  300
IFSSDSVLWD LPCDDLMNPI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449008.10.0PREDICTED: myb-related protein 308 isoform X1
SwissprotQ7XQN11e-116MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A1S3BLZ80.0A0A1S3BLZ8_CUCME; myb-related protein 308 isoform X1
STRINGXP_008449008.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-103myb domain protein 103