PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004862
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 196aa    MW: 22464.4 Da    PI: 7.9003
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004862genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-314597558
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 +YkeClkNhA+++Ggha+DGCgEfmps g +g+ +alkCaAC CHRnFHR++ +
    Cla004862 45 NYKECLKNHAVAVGGHALDGCGEFMPS-GPHGSLDALKCAACHCHRNFHRKDIT 97
                 7*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.2E-284595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-294595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-194695IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7874695IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.03E-18123189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28124190IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-25129186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEVEEHEEED MEIVEPASNY INKIHPLSRH TKNPSPVHSN PILYNYKECL KNHAVAVGGH  60
ALDGCGEFMP SGPHGSLDAL KCAACHCHRN FHRKDITDDG GVNGESGSQY ISYWRAPRML  120
ALPSPSSARK RVRTKFTEEQ KEKMVEMAEK MEWRIQKTDE AAVMEFCNEI GVKRRVLKVW  180
MHNNKNTFRS KESKQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221301871875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022999794.12e-87zinc-finger homeodomain protein 1-like
SwissprotQ9SB613e-51ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A1U8M3J74e-58A0A1U8M3J7_GOSHI; zinc-finger homeodomain protein 2-like
STRINGGorai.003G042700.16e-58(Gossypium raimondii)
STRINGGorai.008G092000.13e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-45homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]