PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004938
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 308aa    MW: 33142.5 Da    PI: 5.0222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004938genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.68e-161611992259
                EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++YYrC+s+ gC ++k+vers+ dp++++itY+g+H+h+
  Cla004938 161 KNYYRCSSSkGCGARKQVERSNADPETFIITYTGDHTHP 199
                78*****998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-16108118IPR003657WRKY domain
SMARTSM007741.4E-11156200IPR003657WRKY domain
SuperFamilySSF1182904.18E-13160201IPR003657WRKY domain
PROSITE profilePS5081118.659161201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-16161201IPR003657WRKY domain
PfamPF031062.0E-13161199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAAGNDDWDL SAVVRSCNSA VSATDSTAAA ESALSCLASL TFEDDPNDVA FSFSDILQPK  60
QPNGFHELHQ AFLSFLPNHS AAAAVVSAPP AAVPEVPNST PNRHFRQGIK PIRPNPHPVA  120
LQQQQHHLRQ PPFPPDFPSS AMTQTLIPKS RKRQVEVQGL KNYYRCSSSK GCGARKQVER  180
SNADPETFII TYTGDHTHPR PTHRNSLAGS SRNRSSSSVP TRHPATAGPD PSLTATALVA  240
SSSSPAASPI TPLNDDDGGG GEKDTEMFED MTIDSDDDDE DDDILIPNLT VRDEIFVGFE  300
ELGRRGPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437537.11e-140PREDICTED: probable WRKY transcription factor 27 isoform X2
TrEMBLA0A1S3AUW01e-139A0A1S3AUW0_CUCME; probable WRKY transcription factor 27 isoform X2
STRINGXP_008437536.11e-136(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-20WRKY DNA-binding protein 27