PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla004946

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GRAS

Protein Properties

Length: 580aa MW: 63401.5 Da PI: 6.3338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004946	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	348.7	9.4e-107	216	580	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 + ++e+ a+s+g+le ++++La + ++++ +g+++qRla y++ AL++r++ + +pp + +++ aa++l+++vsP++k+++++aN aI Cla004946 216 QSVIEAGAAISEGKLEGVDEILAPVVKISNARGNSVQRLAEYMVLALKSRVNP------AEFPPPVLE-IYGDDHSAATQLLYDVSPCFKLAFMAANLAI 308 67889999*******************************************......555555443.46999********************** PP GRAS 103 leavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 lea+ +e +++H++Dfdi++G+Q+++L++ L+ R++g+ +++T+v+ esg e+l+ +ge L+++A+elgv f+fn+ v ++l++l+ e+L ++p+E+ Cla004946 309 LEAIGEEdRKLHVVDFDIGKGGQYMNLIHLLSGRQKGKVAVKLTAVVV-ESGGDERLKLVGESLSQLANELGVGFNFNI-VRHKLAELTRESLGCEPDES 406 9997888*********************************.77899********************9.799************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 l Vn++++l+r++desvs+e++rde+L+ vksl P vv+v+eqe+++n+++F++r++e++ yys+lfds+++++ r++ +r+kvE+ lgr++ n +ace Cla004946 407 LTVNFAFKLYRMPDESVSTENPRDELLRRVKSLAPAVVTVMEQELNMNTAPFAARVAESCVYYSSLFDSIDSTVRRDHPDRVKVEEG-LGRKLANSLACE 505 ***********************************************************************************.******** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g++r+er+e +kWr+r+++aGF++ p+s+++a+++k+ l+ + + g++v+ee+g +++gW++r+L++++aWr Cla004946 506 GRDRVERCEVSGKWRARMGMAGFEARPMSQTVAESMKTRLSSGYrvNPGFTVKEENGGICFGWMGRTLTVTTAWR 580 *********************************99887655889************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.583	188	558	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-104	216	580	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MSSNPSQPNA YRSQLSGGSF IDPAAAQIAR QIPSSLLGKR NLADLHSHNQ HSHHNLPLNN 60 LFLRSVKPRA FTHPVSPLSN LDFYSTMSLP SPDVQSHRLY GTSSGALLQQ LRQQPNGGIP 120 VRDLQSLDSE KKMMMNHRLQ ELEKELLEDN DDDDGSDAVS VITSSNTAWC ETIYNLISPN 180 PSPTAQNLSP TSSASSSCSS STSSSVASPA SDSWKQSVIE AGAAISEGKL EGVDEILAPV 240 VKISNARGNS VQRLAEYMVL ALKSRVNPAE FPPPVLEIYG DDHSAATQLL YDVSPCFKLA 300 FMAANLAILE AIGEEDRKLH VVDFDIGKGG QYMNLIHLLS GRQKGKVAVK LTAVVVESGG 360 DERLKLVGES LSQLANELGV GFNFNIVRHK LAELTRESLG CEPDESLTVN FAFKLYRMPD 420 ESVSTENPRD ELLRRVKSLA PAVVTVMEQE LNMNTAPFAA RVAESCVYYS SLFDSIDSTV 480 RRDHPDRVKV EEGLGRKLAN SLACEGRDRV ERCEVSGKWR ARMGMAGFEA RPMSQTVAES 540 MKTRLSSGYR VNPGFTVKEE NGGICFGWMG RTLTVTTAWR

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MSSNPSQPNA YRSQLSGGSF IDPAAAQIAR QIPSSLLGKR NLADLHSHNQ HSHHNLPLNN  60
LFLRSVKPRA FTHPVSPLSN LDFYSTMSLP SPDVQSHRLY GTSSGALLQQ LRQQPNGGIP  120
VRDLQSLDSE KKMMMNHRLQ ELEKELLEDN DDDDGSDAVS VITSSNTAWC ETIYNLISPN  180
PSPTAQNLSP TSSASSSCSS STSSSVASPA SDSWKQSVIE AGAAISEGKL EGVDEILAPV  240
VKISNARGNS VQRLAEYMVL ALKSRVNPAE FPPPVLEIYG DDHSAATQLL YDVSPCFKLA  300
FMAANLAILE AIGEEDRKLH VVDFDIGKGG QYMNLIHLLS GRQKGKVAVK LTAVVVESGG  360
DERLKLVGES LSQLANELGV GFNFNIVRHK LAELTRESLG CEPDESLTVN FAFKLYRMPD  420
ESVSTENPRD ELLRRVKSLA PAVVTVMEQE LNMNTAPFAA RVAESCVYYS SLFDSIDSTV  480
RRDHPDRVKV EEGLGRKLAN SLACEGRDRV ERCEVSGKWR ARMGMAGFEA RPMSQTVAES  540
MKTRLSSGYR VNPGFTVKEE NGGICFGWMG RTLTVTTAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-46	237	580	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437524.1	0.0	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	1e-166	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A1S3AUC8	0.0	A0A1S3AUC8_CUCME; scarecrow-like protein 8
STRING	XP_008437524.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6266	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-157	SCARECROW-like 8