PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004974
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 356aa    MW: 39849 Da    PI: 6.6285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004974genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.39.5e-2633134199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                f+kv tpsdv+k++rl    ++ae++    ++ + ++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l++
  Cla004974  33 FDKVVTPSDVGKLNRLE---QHAERFfpldSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGvGEiGRDRLYI 129
                89************998...9999999999555567889************************************************6669999999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                 ++r+
  Cla004974 130 DWRRR 134
                99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-3428138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2430136IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-2231117No hitNo description
PROSITE profilePS5086312.23833135IPR003340B3 DNA binding domain
PfamPF023622.4E-2333134IPR003340B3 DNA binding domain
SMARTSM010192.2E-1533135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDPPEPEEEA AGGSNSGGGG GRGGGEVERE HMFDKVVTPS DVGKLNRLEQ HAERFFPLDS  60
STNDKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG DIVSFQRGVG  120
EIGRDRLYID WRRRPELPIH HHHHHHYPTT TSLRPSIVVP SGGATTWGPL VWQPLGATTA  180
GYHHQPAAVT PRDHTHLSQI NNNNNNVNGM CCPYGYGSVE TTTSGLVYLR TELGGRSRRA  240
TPRLGEEEFE LEMEGNNNYQ MQQEYCSNGG GASMVILQGN CMEDHKLKTT NNNNNNNNSE  300
EDIPVKKSRL RLFGVNMEME SPISSPSSDD CDLLLSTNPK TTTTTTQFQL PSSIYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-63271372116B3 domain-containing transcription factor NGA1
5os9_B6e-63271372116B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437475.11e-178PREDICTED: uncharacterized protein LOC103482885
TrEMBLA0A1S3AU441e-176A0A1S3AU44_CUCME; uncharacterized protein LOC103482885
STRINGXP_008437475.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-62B3 family protein