PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005052

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 176aa MW: 19924.9 Da PI: 7.2686

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005052	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++C l pyfp ++p kf ++h++FGasn++kll++lp+++r da++s+vyeA ar+rdP+yG++g i++lq+q++ l+ ela++++e Cla005052 14 PCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAE 113 7**********************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-40	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEKNEAHTVA VGSPCAACKI LRRRCRENCE LGPYFPPTEP LKFTIAHRVF GASNIIKLLQ 60 DLPKSQRADA VNSMVYEASA RIRDPIYGCA GSIFQLQKQI NDLQGELAKA QAEVLKMQCQ 120 QANLMTLICK ELAQMPQPPM YDHQPLNQNY NISSPQSYQT YSYLFEEGNI LEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-43	8	121	5	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-43	8	121	5	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	5e-93	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	5e-93	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147298.1	1e-107	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-61	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0A0LUS4	1e-106	A0A0A0LUS4_CUCSA; Uncharacterized protein
STRING	XP_004161318.1	1e-108	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24500	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-64	LOB domain-containing protein 1