PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005144

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 275aa MW: 31615.3 Da PI: 6.0321

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005144	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	133	157	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H Cla005144 133 FYCDLCNKQYKLAMEFEAHLSSydH 157 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	2.1E-16	36	81	IPR000467	G-patch domain
PROSITE profile	PS50174	16.648	38	83	IPR000467	G-patch domain
Pfam	PF01585	9.2E-15	39	79	IPR000467	G-patch domain
SuperFamily	SSF57667	4.4E-5	114	167	No hit	No description
Pfam	PF12171	1.5E-5	133	160	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	135	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
SLADDFIDDF RLPINHKPTE NVDLDNVEQA SLDTQLTSSN VGYRLLQKMG WKGKGLGKDE 60 QGIIEPIKSG MRDPKLGIGK QEEDDFFTAE ENIQRKKLDV EVEETEEHAK KREVLAEREE 120 KIQTEVKEIR KVFYCDLCNK QYKLAMEFEA HLSSYDHNHR KRFKEMREMH GSSSRDDRNK 180 REQQREEREM AKFAQIADAR KKQQQMLEQQ ERAAEAPVST ELRNATSLAD QDQRKTLKFG 240 FSSKGGTSKN IFGGATKKPK VAPVASVFGN DSDDE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	3e-86	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	3e-86	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022159589.1	0.0	G patch domain-containing protein 8
TrEMBL	A0A0A0LW54	0.0	A0A0A0LW54_CUCSA; Uncharacterized protein
STRING	XP_008450514.1	0.0	(Cucumis melo)
STRING	XP_004163770.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5977	24	28