PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005181
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 160aa    MW: 17269.8 Da    PI: 9.4116
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005181genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.4e-201952134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               C+ C+ttkTplWR gp g+k+LCnaCG+++rk++
  Cla005181 19 CVDCKTTKTPLWRVGPTGPKSLCNACGIRFRKRR 52
               ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-121375IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-131653No hitNo description
Gene3DG3DSA:3.30.50.105.7E-161852IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.22E-121953No hitNo description
PROSITE profilePS5011412.4921949IPR000679Zinc finger, GATA-type
PfamPF003201.3E-171952IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGLMDLRQKG LLLPDTKYCV DCKTTKTPLW RVGPTGPKSL CNACGIRFRK RRISTTGTNK  60
GYDRKRGVHN NGSTAMTTVS AATSSATTTT SGSGGGDGDE NLGECESLRM TLMMALEEEE  120
VKNLPSAVKK QRCQRPKKLG EEEKQAAVSL MELSCGSVFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450587.18e-53PREDICTED: GATA transcription factor 16-like
TrEMBLA0A1S3BQ712e-51A0A1S3BQ71_CUCME; GATA transcription factor 16-like
STRINGXP_004173842.15e-53(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.17e-21GATA transcription factor 16