PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005227
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 408aa    MW: 44536.9 Da    PI: 9.0859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005227genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-056486123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Cla005227 64 FVCEICNKGFQRDQNLQLHRRGH 86
               89*******************88 PP
2zf-C2H2171.7e-05141163123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+Lk H +t+
  Cla005227 141 WKCEKCSKRYAVQSDLKAHSKTC 163
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-86386No hitNo description
PfamPF121716.2E-56486IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035596106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-6129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-8136161No hitNo description
SMARTSM0035558141161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6141169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSKISGGSDD GGSFVSDGTH GSSESHQHPQ LKVPKKKRNL PGTPDPDADV VSLSPKTLMA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSGSE TKRRVYVCPE PSCVHHDPAR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKRY AVQSDLKAHS KTCGSKEYKC DCGTIFSRRD  180
SFITHRAFCD ALTEENNKLV SHQVATTMAS TAINAPSFQP QPLQHLLSQT PVLSPPLTLP  240
HDLMPIPPKP LNLSAGPMFS SSISSATDGH HFPSPSALMS ATALLQKAAQ MGAAKGFVTT  300
MAPSSFCGIL GTNCLQKCQE ENILSQLPSK GKAVDMEMID NIPMLNGVLD DQPVVEAARK  360
TMTLDLLGAE GGKGMKFQAQ ENVGFGGLVE NMTYFRNQGA MGRQIWEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33137201367Zinc finger protein JACKDAW
5b3h_F2e-33137201367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135615.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ8H1F51e-108IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0A0LZ120.0A0A0A0LZ12_CUCSA; Uncharacterized protein
STRINGXP_004135615.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-109indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]