PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005438
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 443aa    MW: 48592 Da    PI: 6.1488
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005438genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.62.8e-118814403374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 lLl+cAe+v+ ++l++a+ lL ++sel+sp g++ +R+ ayf  AL+ar+ +s+ ++y+ l+ ++ ++++s++ ++al+ ++ +sP++kfsh+taNqaI
  Cla005438  81 GLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFSHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAI 180
                58************************************************************************************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                 +a++ge+rvH+iD+d++qGlQWp L++ LasRp++  slRi g+gs    s+e l++tg+rLa+fA++lg+pfef+++  k  +  ++++L+++ gE++
  Cla005438 181 FQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGS----SSELLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPNQLELRAGETV 276
                ***********************************************....9**************************766667777************* PP

       GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                +V++++  h l+d ++s       +L+l+ +l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l  ++ er++vE++l+g ei+n++a  g
  Cla005438 277 VVHWMH--HCLYDVTGSDIG----TLRLLSNLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDSLTMDNLERHVVEQQLFGCEIRNIIAVGG 369
                *****9..888888888888....**********************.789************************************************** PP

       GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +r+ + + +e+W + l+++GFkpv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Cla005438 370 PKRTGEVK-VERWGDELKRVGFKPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 440
                **998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.69253420IPR005202Transcription factor GRAS
PfamPF035149.8E-11681440IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLRSLIPHSP INSTSNSPSS MNSKRSDPDS SPDHPSSKRL NSRPNNFSAP GKAVPHPDFD  60
EDQEDPPLVD GSDSTGLRLL GLLLQCAECV AIDNLQEAND LLPEISELSS PFGTSPERVG  120
AYFSHALQAR VISSCLGTYS PLTIRTLNQT QSQRIFNALQ SYNSISPLIK FSHFTANQAI  180
FQALDGEDRV HVIDLDVMQG LQWPGLFHIL ASRPKKIQSL RISGFGSSSE LLQSTGRRLA  240
DFATSLGLPF EFHPVEGKIG NLTNPNQLEL RAGETVVVHW MHHCLYDVTG SDIGTLRLLS  300
NLKPKLITIV EQDLSHGGSF LGRFVEALHY YSALFDALGD SLTMDNLERH VVEQQLFGCE  360
IRNIIAVGGP KRTGEVKVER WGDELKRVGF KPVSLGGNPA AQASLLLGMF PWKGYTLVEE  420
NGCLKLGWKD LSLLTASAWQ PSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1687344113380Protein SCARECROW
5b3h_A1e-1687344112379Protein SCARECROW
5b3h_D1e-1687344112379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022980905.10.0scarecrow-like protein 23
RefseqXP_023552635.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1S3BTL20.0A0A1S3BTL2_CUCME; scarecrow-like protein 23
STRINGXP_008451856.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]