PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005462

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

BES1

Protein Properties

Length: 669aa MW: 75439.1 Da PI: 6.608

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005462	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	156.1	2.5e-48	60	195	1	134
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslk 99 gg+ +++++kE+E++k+RER+RRai+++i+aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+++ p ++++ ++ +s es+++ s k Cla005462 60 GGKAKREREKEKERTKLRERHRRAITSRILAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSTPPS--QSQGAAFPVRSGESPISsGSFK 157 57899****************************************************************999888..666777888888888887789 PP DUF822 100 ssalaspvesysaspksssfpspssldsislasa...a 134 +++++ ++ + ++++ ++++sp+slds+ +++ + Cla005462 158 GCSIKATLDCQPSVLRIDESLSPASLDSVVITERdakN 195 *****************************999876542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.5E-49	61	205	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.86E-157	227	665	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	7.1E-169	230	661	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	5.3E-80	255	625	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	267	281	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	288	306	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	310	331	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	403	425	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	476	495	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	510	526	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	527	538	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	545	568	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-52	583	605	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MSGSLNDDSF HQDLQPQANH ASDYLSHQLQ PPPPPPRRPR GFAATAAAMG PTTTTAAATG 60 GKAKREREKE KERTKLRERH RRAITSRILA GLRQYGNFPL PARADMNDVL AALAREAGWV 120 VEADGTTYRQ STPPSQSQGA AFPVRSGESP ISSGSFKGCS IKATLDCQPS VLRIDESLSP 180 ASLDSVVITE RDAKNEKYTA LSPLNAAHCL EDQLIQDIRS RENESQFRGT PYVPVYVILA 240 TGFINNFCQL IDPDGVRQEL SHLQSLNVDG VIVDCWWGIV EAWNPQKYVW SGYRDLFNII 300 REFKLKVQVV MAFHAFGGTE SGDAFIKLPQ WVLEIGKENP DIFFTDREGR RNKDCLSWGI 360 DKERVLRGRT GIEVYFDFMR SFHTEFNDLF AEGLVSAIEV GLGAFGELKY PSFSERMGWR 420 YPGIGEFQCY DKYLQQSLRK AAGLRGHSFW ARGPDNAGQY NSRPHESGFF CERGDYDSYY 480 GRFFLQWYAQ TLIYHVDNVL SLASLVFEET KFIVKIPAVY WWYKTSSHAA ELTAGFYNPS 540 NQDGYSPVFD VLKKHCVIVK LVCCGMPVAG QEVDDTSADP ESLSWQILNS AWDRGLTVAG 600 ENSLSCYDRD GYMRIIDMAK PRSDPDRHHF SFFAYRQPSA LIQGAVCFPE LDYFIKCMHG 660 KYLICSSLF

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MSGSLNDDSF HQDLQPQANH ASDYLSHQLQ PPPPPPRRPR GFAATAAAMG PTTTTAAATG  60
GKAKREREKE KERTKLRERH RRAITSRILA GLRQYGNFPL PARADMNDVL AALAREAGWV  120
VEADGTTYRQ STPPSQSQGA AFPVRSGESP ISSGSFKGCS IKATLDCQPS VLRIDESLSP  180
ASLDSVVITE RDAKNEKYTA LSPLNAAHCL EDQLIQDIRS RENESQFRGT PYVPVYVILA  240
TGFINNFCQL IDPDGVRQEL SHLQSLNVDG VIVDCWWGIV EAWNPQKYVW SGYRDLFNII  300
REFKLKVQVV MAFHAFGGTE SGDAFIKLPQ WVLEIGKENP DIFFTDREGR RNKDCLSWGI  360
DKERVLRGRT GIEVYFDFMR SFHTEFNDLF AEGLVSAIEV GLGAFGELKY PSFSERMGWR  420
YPGIGEFQCY DKYLQQSLRK AAGLRGHSFW ARGPDNAGQY NSRPHESGFF CERGDYDSYY  480
GRFFLQWYAQ TLIYHVDNVL SLASLVFEET KFIVKIPAVY WWYKTSSHAA ELTAGFYNPS  540
NQDGYSPVFD VLKKHCVIVK LVCCGMPVAG QEVDDTSADP ESLSWQILNS AWDRGLTVAG  600
ENSLSCYDRD GYMRIIDMAK PRSDPDRHHF SFFAYRQPSA LIQGAVCFPE LDYFIKCMHG  660
KYLICSSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-122	232	667	11	450	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022931287.1	0.0	beta-amylase 8-like
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1S3BTA5	0.0	A0A1S3BTA5_CUCME; Beta-amylase
STRING	XP_008451866.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]